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Ball, J.B., Costelloe, J, Konnecker,G, Keegan B.F.,1994. The Rocky subtidal assemblages of Kinsale Harbour. 28th European Marine Biology Symposium, Crete. BIOLOGY AND ECOLOGY OF SHALLOW COASTAL WATERS. 28 EMBS Symposium. Published by Olsen and Olsen, Helstedsvej 10, DK 3480 Fredensborg, Denmark.

Campbell, D.W., S.M. Creaven, S.L. Hardy, F. Kampouris, D.J. Smith, R.L. Allwood, S.W. Tetlow and A. Hunt, 2001. Offshore Geological Carbon Dioxide Sequestration. Published in The 6th International Carbon Dioxide Conference, Extended Abstracts, Vol. II, pp. 769-772

Costelloe, M., P.Dinneen, B.F.Keegan, B.O'Connor, D.McGrath and G.Konnecker, 1986. Littoral and benthic investigations on the south coast of Ireland.  Macrofaunal distribution patterns and their relationship to the sedimentary environment in Kinsale Harbour. Proc.R.Ir.Acad.,86B, 81-106.

Costelloe, J; Costelloe, M and Roche, N., 1995. Infestations on Salmon Smolts (Salmo salar L. ) located at various distances between an Atlantic salmon farm and a wild Fishery in Killary Harbour,West Coast of Ireland. Aquaculture International 3, 379- 393

Costelloe, M., J. Costelloe and N. Roche, 1996. Planktonic dispersion of larval salmon-lice, Lepeophtheirus salmonis, associated with cultured salmon, Salmo salar, on the west coast of Ireland.  J. mar. biol. Ass. U.K, 76, 141-149.

Costelloe, M., J. Costelloe, N. Roche and B. O'Connor, 1996.Studies on sea lice larvae Lepeophtheirus salmonis  KROYER on the west coast of Ireland.  In:  Irish Marine Science. B.F. Keegan and R. O'Connor (eds) , Galway University Press Ltd.pp303-324.

Costelloe, M; Costelloe, J.; O'Donohoe, G ; Coughlan N and B. O'Connor, 1997. A Review of field studies on the sea-louse, Lepeotheirus salmonis , Kroyer on the West Coast of Ireland. Interactions between salmon culture and wild stocks of Atlantic salmon : the scientific and management issues. ICES/NASCO Symposium, 18-22 April 1997.

Costelloe, M; Costelloe, J.; Coughlan N; O'Donohoe, Ger and O'Connor, B., 1997. Distribution of the larval stages of Lepeotheirus salmonis in a number of selected bays on the west coast of Ireland. ICES J. of Marine Science.

Costelloe, M., Costelloe, J., O'Connor, B. and P. Smith, 1998. Densities of polychaetes in sediments under a salmon farm using Ivermectin.  Bull. Eur. Ass. Fish Pathol., 18 (1).

Costelloe, M., Costelloe, J., Coghlan, N., O'Donohoe, G. and O'Connor, B. 1998. Distribution of larval stages of Lepeophtheirus salmonis in three bays on the west coast of Ireland. ICES Journal of Marine Science, 55 : 181 - 187.

Costelloe. M., Costelloe, J., O'Donohoe, G., Coghlan, N.J., Oonk, M. and Y. Van Der Heijden, 1998.  Planktonic distribution of sea lice larvae, Lepeophtheirus salmonis, in Killary Harbour, West Coast of Ireland.  Journal of the Marine Biological Association of the United Kingdom, 78, pp. 853-874.

Costelloe, M., Costelloe, J., O’Donohoe, G., Coghlan, N. and B. O’Connor, 2000.  A review of field studies on planktonic larvae of Lepeophtheirus salmonis on the West Coast of Ireland, Caligus, Issue 6, (March 2000), pp 15-16.

Costelloe, J., 1985. The annual reproductive cycle of the holothurian Aslia lefevrei (Dendrochirota: Echinodermata).Mar. Biol. 88, 155-165

Costelloe, J. and B.F. Keegan, 1986. In situ epibenthic studies on the west coast of Ireland. Hydrobiologia

Costelloe, J., 1988. Reproductive cycle, development and recruitment of two geographically separated populations of the dendrochirote holothurian, Aslia lefevrei (Barrois). Mar. Biol. 88,155-165

Coyne, R., Hiney, M., O'Connor, B., Kerry, J., Cazbon, D. and Smith, P. 1994. Concentration and persistance of oxytetracycline in sediments under a marine salmon farm. Aquaculture, 123 : 31 - 42.

Dinneen, P., O'Connor, B., Keegan, B., McGrath, D. and Crowe,W. 1986. Temporal variability of the benthic assemblages in Kinsale Harbour, Co.Cork. Proc.Roy.Ir.Acad.

Keegan, B.F., Rhoads, D.C., Germano, J.D., Solan, M., Kennedy, R., O’Connor, I., O’Connor, B., McGrath, D., Dinneen, P., Acevedo, S., Young, S., Grehan, A. and Costelloe, J. (in press) ‘Sediment Profile Imagery (SPI) as a benthic monitoring tool - Introduction to a long term case history evaluation (Galway Bay, west coast of Ireland)’. In: Aller, J.Y, Woodin, S.A. and Aller, R.C. (eds.). ‘Organism-Sediment Interactions’ Belle W. Baruch Library in Marine Science, University of South Carolina Press.

Keegan, B., O'Connor, B., McGrath, D., Konnecker, G. and O'Foighill.D. 1986. The benthic assemblages of Carnsore Point, Co. Wexford. Proc. Roy.Ir.Acad.

Keegan, B., O'Connor, B., McGrath, D. and Konnecker, G. 1986. Macrobenthic fauna and demersal fish of Killary Harbour, Co.Galway.Proc.R. I. A.,86 : 54-65.

McGrath, D. O'Connor, B., Keegan, B.F., Konnecker, G. and O'Foighil, D. (1988).  The Benthic Fauna of Carnnsore Point, Co. Wexford.  Part 1.  Mollusca.Ir. Nat.J., 22 : 385 - 388.

Moylette, M. and. O’Connor, B, 2000. An assessment of the effects of a smolt rearing unit on the ecology of Lough Fada, Clifden, Co. Galway. Proceedings of 2nd Conference on Salmon Farming.

O'Connor, B., Costelloe,J., Keegan, B. and Rhoads, D, 1989. The use of REMOTS technology in monitoring coastal enrichment resulting from mariculture. Marine Pollution Bulletin, 20 : 384-390
 
O'Donnel,G. and Costelloe, J.,1990. Energetic variation during starvation (hibernation) of the dendrochirote holothurian Thyone fusus (O F Muller). In: Proc.2nd european Conference on Echinoderms, Brussels, Belgium,18-21 September. 339   Ed.de Ridder, C., Dubois, P., Lahaye,M. and Jangoux,M.

O'Connor, B., Hartnett, M. and Costelloe. J., 1991  Site selection and environmental monitoring in the mariculture industry : an integrated protocol.Aquaculture and the Environment. N. De Pauw and J. Joyce (Eds) European Aquaculture Society Special Publication No 16, Gent, Belgium.

O'Connor, B.,  Costelloe.J, Dinneen, P.and Faull, J.,1993. The effect of harrowing on sediment quality under a salmon farm on the west coast of Ireland. International Conference for the Exploration of the Sea. C.M. 1993/F:19 81st Statutory Meeting. Dublin

Makara A., M. Thessalou-Legaki, J. Costelloe, A. Nicolaidou, B.F. Keegan, 2001. Mapping the pollution gradient of the saronikos Gulf benthos prior to the operation of the Athens sewage treatment plant, Greece. Marine pollution Bulletin Vol 42, Issue 12, pp 1417-1419.
Nicolaidou, A; Makra, A.; Thessalou-Legaki  M. and Costelloe J., 1996. Benthic Communities and organic enrichment in the inner Saronikos Gulf. 18th Panhellenic  Conference EEBE, 17-19 April 1996, Kalmata

O'Connor, B., O'Ceidigh, P., Fives, J., Irwin,J., O'Brien, F. and De Bhaldraithe, P. 1986. The Zooplankton of Killary Harbour, Co. Galway. Proc.R. I.A.,86 : 42-46.

O'Connor, B. McGrath, D. and Keegan, B.F.K. 1986 . Demographic equilibrium - the case of an Amphiura filiformis community on the west coast of Ireland. Hydrobiologia 142 :151-158.

O'Connor, B. and Tyndall, P. 1986. Some new and rare Echinodermata from Irish inshore waters. Ir.nat J. 22 : 96 - 97.

O'Connor, B., Bowmer, C.T., McGrath, D. and Raine , R. 1987. Energy requirments through an Amphiura filiformis  population in Galway Bay, West coast of Ireland: A preliminary investigation. Ophelia  26 : 351-357.

O'Connor, B.1987.The Glyceridae (Polychaeta) of the Northeast Atlantic with descriptions of two new species. J.nat.Hist.21 : 167-189.

O'Connor, B. 1987 The deep water elasmobranch. Ir. Nat.J.

O'Connor, B. 1987. Review of Pugh and Fitsimmon's Linn. Soc. Key on the Siphonophora and Velellids. Ir. nat.J.

O'Connor, B.and Lopez-Jamar.E.1987. Reproductive cycle of Paradoneis armata Glemarec from Ria de La Coruna, Northwest Spain. Ophelia, 27 : 127-136.

O'Connor, B.1987. A redescription of Anaitides rosea (McIntosh1877) ( Polychaeta:Phyllodocidae),with notes on nomenclature, ecology and distribution and a key to the genera of Phyllodocinae from the NE Atlantic. Ir.nat.J. 22 : 310 - 314.

O'Connor, B.1988.  The Benthic Fauna of Cornsore Point, Co. Wexford.  Part 11. Echinodermata and Sipunculida. Ir.Nat.J. 22 : 385 - 388.

O'Connor, B. 1988. Literature for the identification of the Polychaeta. ICES report.

O'Connor, B., Costelloe, J., Keegan, B.F. and Rhoads, D. 1989. The use of REMOTS technology in monitoring coastal enrichment resulting from mariculture. Marine Pollution Bulletin, 20 : 384 - 390.

O'Connor, B., Hartnett, M. and Costelloe. J.  1991. Site selection and environmental monitoring in the mariculture industry : an integrated protocol. Aquaculture and the Environment. N. De Pauw and J. Joyce (Eds) European Aquaculture Society Special Publication No 16, Gent, Belgium.

O'Connor, B. 1991. The use of mathematical models in predicting the distribution of macrofaunal communities. Proceedings of a Workshop on "Modelling the Benthos", Yerseke, Holland, March 1991.

O'Connor, B., McGrath, D., Keegan, B. and Konnecker, G. 1992. Macrobenthic faunal assemblages in Galway Bay. Proceedings of the Royal Irish Academy, 93 B : 127 - 136.

O'Connor, B., Costelloe, J., Dinneen, P. and Faull, J. 1993. The effect of harrowing on sediment quality under a salmon farm on the west coast of Ireland. ICES, 1993/F:19 : 1-16.

O'Connor, B. 1996. The impact of organic wastes from marine salmon farms in Ireland and a review of management techniques. In : Disturbance and recovery of ecological systems, eds. P. Giller and A. Myers, Royal Irish Academy, 194 pps.

O’Donoghue, G., Costelloe, M. and J. Costelloe, 1998.  Development of a management Strategy for the Reduction/Elimination of sea lice larvae, Lepeophtheirus salmonis, parasites of salmon and trout.  The Marine Institute Series, No. 6 1998, 51pp.

O’Donohoe, G. and O’Connor, B. 2000. Water quality in Kilkieran Bay, Co. Galway. Marine Institute publication.

O’Connor, B., White, F. and Ryan, C. A field study on the effect of longterm use of ivermectin on benthic macrofauna under a salmon farm. Proceedings of 2nd Conference on Salmon Farming.

O’Connor, B., Costelloe, J. and O’Donohoe, G. 2000. A review of benthic conditions under salmon farms in Irish waters. Proceedings of 2nd Conference on Salmon Farming.

O’Connor, B.D.S., Costelloe, J., Keegan, B.F. and Rhoads, D.C. (1989) The use of REMOTS® technology in monitoring coastal enrichment resulting from mariculture. Marine Pollution Bulletin, 20(8): 384 – 390.

O’Connor, B., Hartnett, M. & Costelloe, J. (1991) Site selection and environmental monitoring in the mariculture industry: an integrated protocol. De Pauw, N. and Joyce, J. (eds.). Aquaculture and the Environment. pp. 191 – 202. European Aquaculture Special Publication  No. 16, Gent, Belgium.

Parapar, J., O'Connor, B., Urgorri, V. and Besteiro, C. 1993. Primera cita de Glycera dayi  O'Connor, 1987 (Polychaeta, Glyceridae) en las costas ibericas. Boletin de la Real Sociedad Espanola de Historia Natural, 90 : 43 - 46.

Parapar, J., O'Connor, B., Besteiro, C. and Urgorri, V. 1994. Abyssoninoe hibernica  (McIntosh) (Polychaeta, Lumbrineridae), a valid species from the northeast Atlantic. Sarsia, 79 : 157 - 162.

Parra, S.C.V., Rodriguez, E., Lopez-Jamar, E., O'Connor, B. and Vietez, J.M. 1995. Contribucion al conocimiento del genero Glycera  Savigny, 1818 (Polychaeta : Glyceridae) en la penisula Iberica. Boletino Instituto Espanol Oceanographica 11 (1) : 53 - 59.

Robinson K.A., T. Darbyshire K. Van Landeghem, C. Lindenbaum, F. McBreen, S. Creaven, K. Ramsay, A.S.Y. Mackie, N. Mitchell, A. Wheeler, J. Wilson, F. O’Beirn & E.I.S. Rees, 2008. BIOMÔR HABMAP Volume 1, Southern Irish Sea seabed habitat surveys. – Studies in Marine Biodiversity and Systematics from the National Museum of Wales (in press 2008)

Roche, C., Lyons, D.O., B. O’Connor. (in press). Benthic surveys of sandbanks in the Irish Sea. Irish Wildlife Manuals. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland.

Roche, C., Clarke, S. & B. O’Connor (2005). Inventory of Irish marine wildlife publications.    Irish Wildlife Manuals, No. 16. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland.

Roche, C. & B.F. Keegan (2004). Benthic monitoring of Galway Bay spoilground. Benthos Research Group, National University of Ireland, Galway. Report on behalf of Galway Harbour Company.

Ruane N.M., Nolan D.T., Rotllant J., Costelloe.J. and Wendelaar  Bonga S.E., 2000
Experimental exposure of rainbow trout Oncorhynchus mykiss(Walbaum) to the infective stages of the sea louse Lepeophtheirus salmonis (Kroyer) influences the physiological response to an acute stressor. Fish and Shellfish Immunology (2000) 10,000-000

Smith, P., Edwards, G., O'Connor, B., Costelloe, M. and J. Costelloe, 1997.  Photographic Evidence of the Importance of Macrofauna in the removal of feed pellets from the sediment under marine salmon farms.  Bull. Eur. Ass. Fish Pathol. 17(1),23-26

Tetlow, S., S. Creaven, E.G. Jones and D.G. Reid, 2004.  Laser stripe imaging to determine three-dimensional information on fish shoals. Underwater Technology, Vol. 26: No. 1, pp. 19-25